MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes.
Identifieur interne : 000141 ( Main/Exploration ); précédent : 000140; suivant : 000142MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes.
Auteurs : Srikar Chamala [États-Unis] ; Nicolás García [Chili] ; Grant T. Godden [États-Unis] ; Vivek Krishnakumar [États-Unis] ; Ingrid E. Jordon-Thaden [États-Unis] ; Riet De Smet [Belgique] ; W Brad Barbazuk [États-Unis] ; Douglas E. Soltis [États-Unis] ; Pamela S. Soltis [États-Unis]Source :
- Applications in plant sciences ; 2015.
Abstract
Targeted sequencing using next-generation sequencing (NGS) platforms offers enormous potential for plant systematics by enabling economical acquisition of multilocus data sets that can resolve difficult phylogenetic problems. However, because discovery of single-copy nuclear (SCN) loci from NGS data requires both bioinformatics skills and access to high-performance computing resources, the application of NGS data has been limited.
DOI: 10.3732/apps.1400115
PubMed: 25909041
Affiliations:
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Godden</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, University of Florida, Gainesville, Florida, USA ; Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA ; Rancho Santa Ana Botanic Garden, Claremont, California, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, University of Florida, Gainesville, Florida, USA ; Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA ; Rancho Santa Ana Botanic Garden, Claremont, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Krishnakumar, Vivek" sort="Krishnakumar, Vivek" uniqKey="Krishnakumar V" first="Vivek" last="Krishnakumar">Vivek Krishnakumar</name><affiliation wicri:level="2"><nlm:affiliation>Plant Genomics, J. Craig Venter Institute, Rockville, Maryland, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Plant Genomics, J. Craig Venter Institute, Rockville, Maryland</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Jordon Thaden, Ingrid E" sort="Jordon Thaden, Ingrid E" uniqKey="Jordon Thaden I" first="Ingrid E" last="Jordon-Thaden">Ingrid E. Jordon-Thaden</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, Bucknell University, Lewisburg, Pennsylvania, USA ; Jepson and University Herbaria, University of California, Berkeley, Berkeley, California, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, Bucknell University, Lewisburg, Pennsylvania, USA ; Jepson and University Herbaria, University of California, Berkeley, Berkeley, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="De Smet, Riet" sort="De Smet, Riet" uniqKey="De Smet R" first="Riet" last="De Smet">Riet De Smet</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie, 9052 Ghent, Belgium ; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie, 9052 Ghent, Belgium ; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent</wicri:regionArea><wicri:noRegion>9052 Ghent</wicri:noRegion></affiliation></author><author><name sortKey="Barbazuk, W Brad" sort="Barbazuk, W Brad" uniqKey="Barbazuk W" first="W Brad" last="Barbazuk">W Brad Barbazuk</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, University of Florida, Gainesville, Florida, USA ; Genetics Institute, University of Florida, Gainesville, Florida, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, University of Florida, Gainesville, Florida, USA ; Genetics Institute, University of Florida, Gainesville, Florida</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author><author><name sortKey="Soltis, Douglas E" sort="Soltis, Douglas E" uniqKey="Soltis D" first="Douglas E" last="Soltis">Douglas E. Soltis</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, University of Florida, Gainesville, Florida, USA ; Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA ; Genetics Institute, University of Florida, Gainesville, Florida, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, University of Florida, Gainesville, Florida, USA ; Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA ; Genetics Institute, University of Florida, Gainesville, Florida</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author><author><name sortKey="Soltis, Pamela S" sort="Soltis, Pamela S" uniqKey="Soltis P" first="Pamela S" last="Soltis">Pamela S. Soltis</name><affiliation wicri:level="2"><nlm:affiliation>Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA ; Genetics Institute, University of Florida, Gainesville, Florida, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA ; Genetics Institute, University of Florida, Gainesville, Florida</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author></analytic><series><title level="j">Applications in plant sciences</title><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Targeted sequencing using next-generation sequencing (NGS) platforms offers enormous potential for plant systematics by enabling economical acquisition of multilocus data sets that can resolve difficult phylogenetic problems. However, because discovery of single-copy nuclear (SCN) loci from NGS data requires both bioinformatics skills and access to high-performance computing resources, the application of NGS data has been limited.</div></front></TEI><affiliations><list><country><li>Belgique</li><li>Chili</li><li>États-Unis</li></country><region><li>Californie</li><li>Floride</li><li>Maryland</li></region></list><tree><country name="États-Unis"><region name="Floride"><name sortKey="Chamala, Srikar" sort="Chamala, Srikar" uniqKey="Chamala S" first="Srikar" last="Chamala">Srikar Chamala</name></region><name sortKey="Barbazuk, W Brad" sort="Barbazuk, W Brad" uniqKey="Barbazuk W" first="W Brad" last="Barbazuk">W Brad Barbazuk</name><name sortKey="Godden, Grant T" sort="Godden, Grant T" uniqKey="Godden G" first="Grant T" last="Godden">Grant T. Godden</name><name sortKey="Jordon Thaden, Ingrid E" sort="Jordon Thaden, Ingrid E" uniqKey="Jordon Thaden I" first="Ingrid E" last="Jordon-Thaden">Ingrid E. Jordon-Thaden</name><name sortKey="Krishnakumar, Vivek" sort="Krishnakumar, Vivek" uniqKey="Krishnakumar V" first="Vivek" last="Krishnakumar">Vivek Krishnakumar</name><name sortKey="Soltis, Douglas E" sort="Soltis, Douglas E" uniqKey="Soltis D" first="Douglas E" last="Soltis">Douglas E. Soltis</name><name sortKey="Soltis, Pamela S" sort="Soltis, Pamela S" uniqKey="Soltis P" first="Pamela S" last="Soltis">Pamela S. Soltis</name></country><country name="Chili"><noRegion><name sortKey="Garcia, Nicolas" sort="Garcia, Nicolas" uniqKey="Garcia N" first="Nicolás" last="García">Nicolás García</name></noRegion></country><country name="Belgique"><noRegion><name sortKey="De Smet, Riet" sort="De Smet, Riet" uniqKey="De Smet R" first="Riet" last="De Smet">Riet De Smet</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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